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Bioinformatics
SPDEv3.0: A Multidisciplinary Integrated Data Analysis Platform
23 October 2025 by
Danyang Xu
Bioinformatics
COSIME: Cooperative multi-view integration and Scalable and Interpretable Model Explainer
21 October 2025 by
Jae Jin Choi
and
others
Bioinformatics
Predicting the conformational flexibility of antibody and T-cell receptor CDRs
16 October 2025 by
F. Spoendlin
and
others
at
University of Oxford
Bioinformatics
Domain shifts in infant brain diffusion MRI: Quantification and mitigation for fODF estimation
7 October 2025 by
Runfeng Lin
and
others
Bioinformatics
Domain shifts in infant brain diffusion MRI: Quantification and mitigation for fODF estimation
7 October 2025 by
Runfeng Lin
and
others
Bioinformatics
Changes in miRNA secondary structure can predict mutations associated with cancer and other diseases
3 October 2025 by
J. Novev
and
S. Ahnert
Bioinformatics
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
2 October 2025 by
Junming Su
and
others
Bioinformatics
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
2 October 2025 by
Junming Su
and
others
Bioinformatics
MDPath: Unraveling Allosteric Communication Paths of Drug Targets through Molecular Dynamics Simulations
1 October 2025 by
Niklas Piet Doering
and
others
at
Freie Universität Berlin
Bioinformatics
MDPath: Unraveling Allosteric Communication Paths of Drug Targets through Molecular Dynamics Simulations
1 October 2025 by
Niklas Piet Doering
and
others
at
Freie Universität Berlin
Bioinformatics
Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcriptomics Clustering
26 September 2025 by
Yunyi Yan
and
others
Bioinformatics
HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
25 September 2025 by
S. Rio
and
others
Bioinformatics
HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
25 September 2025 by
S. Rio
and
others
Bioinformatics
ScIsoX: A Multidimensional Framework for Measuring Transcriptomic Complexity in Single-Cell Long-Read Sequencing Data
22 September 2025 by
Songquan Wu
and
U. Schmitz
at
James Cook University
Bioinformatics
ScIsoX: A Multidimensional Framework for Measuring Transcriptomic Complexity in Single-Cell Long-Read Sequencing Data
22 September 2025 by
Songquan Wu
and
U. Schmitz
at
James Cook University
Bioinformatics
Gamma Approximation of Stratified Truncated Exact test (GASTE-test) & Application
21 September 2025 by
A. Wendling
and
C. Galiez
Bioinformatics
Gamma Approximation of Stratified Truncated Exact test (GASTE-test) & Application
21 September 2025 by
A. Wendling
and
C. Galiez
Bioinformatics
Trans-Driver: a deep learning approach for cancer driver gene discovery with multi-omics data
19 September 2025 by
Hongshen Yang
and
others
Bioinformatics
Trans-Driver: a deep learning approach for cancer driver gene discovery with multi-omics data
19 September 2025 by
Hongshen Yang
and
others
Bioinformatics
Fine-Tuning Protein Language Models Unlocks the Potential of Underrepresented Viral Proteomes
18 September 2025 by
Riya Sawhney
and
others
Bioinformatics
GPU-accelerated homology search with MMseqs2
18 September 2025 by
Felix Kallenborn
and
others
Bioinformatics
Fine-Tuning Protein Language Models Unlocks the Potential of Underrepresented Viral Proteomes
18 September 2025 by
Riya Sawhney
and
others
Bioinformatics
GPU-accelerated homology search with MMseqs2
18 September 2025 by
Felix Kallenborn
and
others
Bioinformatics
EnVhog: an extended view of the viral protein space on Earth
18 September 2025 by
R. E. P. Bucio
and
others
Bioinformatics
EnVhog: an extended view of the viral protein space on Earth
18 September 2025 by
R. E. P. Bucio
and
others
Bioinformatics
DockFormer: Efficient Multi-Modal Receptor-Ligand Interaction Prediction using Pair Transformer
18 September 2025 by
B. Shor
and
D. Schneidman-Duhovny
at
Hebrew University of Jerusalem
Bioinformatics
Genetic Architecture and Analysis Practices of Circulating Metabolites in the NHLBI Trans-Omics for Precision Medicine (TOPMed) Program
18 September 2025 by
Noah Wang
and
others
Bioinformatics
DockFormer: Efficient Multi-Modal Receptor-Ligand Interaction Prediction using Pair Transformer
18 September 2025 by
B. Shor
and
D. Schneidman-Duhovny
at
Hebrew University of Jerusalem
Bioinformatics
Genetic Architecture and Analysis Practices of Circulating Metabolites in the NHLBI Trans-Omics for Precision Medicine (TOPMed) Program
18 September 2025 by
Noah Wang
and
others
Bioinformatics
Investigating the performance of foundation models on human 3'UTR sequences
18 September 2025 by
Sergey Vilov
and
Matthias Heinig
Bioinformatics
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